The Biomedical Data Analysis team mainly focuses on the data obtained in medical biology with high-throughput molecular profiling and to make omics technologies usable for translational applications. These include the extraction of relevant biological signals and predictive features from neurodegenerative diseases and immunity across species (human, mouse, rat, pig) and in a variety of tissues and biofluids (kidney, liver, brain, blood) on various modalities: DNA methylation, RNA expression, protein abundance, and tissue histopathological images. We focus on integration and analysis of the data using machine learning approaches and statistics to reveal disease-relevant regulated pathways and improve our understanding of whole biological systems. Our group continuously develops and applies state-of-the-art omics pipelines, as well as omics-based diagnostic analysis and therapeutic approaches closely collaborating with the Data Integration and Genomic AI teams and in cooperation with several research groups both within and outside the UKE. The main experiences we have are in biostatistics, large-scale data analysis and integration of multi-omics data, machine learning and scientific programming, which are beneficial for our collaborators.
Selected Projects
Sex differences in immunity (RU 5068)
Our immune system defends us from the environmental [...]
Members
Rolf Vedder PhD Student Robin Khatri PhD Student Machine learning for scRNA-seq, Deconvolution Cedric Ly PhD Student single cell/nuclear RNA-seq analysis Dr. Maksims Fiosins Postdoctoral Fellow Semantic data integration, development of web apps, data analysis, machine learning of omics data (in autoimmune diseases, neuroscience) Zeba Sultana PhD Student Manuela Poet PhD Student |
Alumni
Project coordination, single cell/nuclear RNA-seq analysis, methylation, multi-omics analyses, cell-cell communication inference, spatial transcriptomics, kidney disease, amyotrophic lateral sclerosis (ALS).
Multi-omics data integration and data analysis, amyotrophic lateral sclerosis (ALS), web development
RNASeq / Omics data analysis
Single-cell sequencing data analysis of immune cells in inflammatory diseases
Research on generative models for transcriptomic data to reconstruct missing expression information and other applications in the single-cell RNA-seq field.
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